PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003917.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family YABBY
Protein Properties Length: 191aa    MW: 21453.8 Da    PI: 8.8202
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003917.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY139.24.7e-4311451162
        YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                  +d++s se++Cyv+C++Cnt+lav vP + ++ +vtv+CGhC +l  ++ + ++q +  ++h          +++ +++     n+ ++ ++s s+ss
  Aco003917.1   1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRIMDTVTVKCGHCNNLSFLSPRPMVQPVCPTDH----------QQMCFQGPC---NDCRRLQPSPSNSS 85 
                  578999**************************************987655555555555555..........333333322...22222222222222 PP

        YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                       ++++ ++++p v++PPek+ r Psaynrf+keeiqrika  Pdi hreafs+aaknWa 
  Aco003917.1  86 ----MSSEQTTTKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAVKPDIPHREAFSMAAKNWAK 145
                  ....234556677889**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.5E-516146IPR006780YABBY protein
SuperFamilySSF470952.49E-892147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-5100147IPR009071High mobility group box domain
CDDcd013901.33E-5107148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDLVSPSEHL CYVRCTYCNT VLAVGVPCKR IMDTVTVKCG HCNNLSFLSP RPMVQPVCPT  60
DHQQMCFQGP CNDCRRLQPS PSNSSMSSEQ TTTKAPFVVK PPEKKHRLPS AYNRFMKEEI  120
QRIKAVKPDI PHREAFSMAA KNWAKCDPRC STVSTSENNV AVRAMSFSHE RSNGLPINSF  180
DVFKPMERKD *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936439.11e-106PREDICTED: protein DROOPING LEAF-like
SwissprotQ76EJ02e-94YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLC0SJV11e-100C0SJV1_LILLO; YABBY transcription factor
STRINGBGIOSGA012115-PA4e-92(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-54YABBY family protein